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| Structure: NULL | ||||
| Sequence | Organism | ID# | ID | Notes |
| RP0648 | 648 | |||
| Summary for Structure NULL - 1 records total | ||||
| Structure: (((((((((((::(((:::[[[[[)))::))))::::)))))))::::::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCTCTCTCCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAG | U68074 E.coli | RP0175 | 175 | PKB-number: PKB50 Definition: Pseudoknot PK2 of E.coli tmRNA Organism: E.coli More ... |
| Summary for Structure (((((((((((::(((:::[[[[[)))::))))::::)))))))::::::::::]]]]] - 1 records total | ||||
| Structure: ((((((((((:(((:[[[:[[[))):)))))))))):::::::::]]]:]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGAC | U68074 E.coli | RP0177 | 177 | PKB-number: PKB52 Definition: Pseudoknot PK4 of E.coli tmRNA Organism: E.coli More ... |
| Summary for Structure ((((((((((:(((:[[[:[[[))):)))))))))):::::::::]]]:]]] - 1 records total | ||||
| Structure: ((((((((((::::::::[[[[[[[[[::::))))))))))::::]]]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AAAATGTAAATATTATTTCATTTTTAACTGCTTTGCGTTTTATGTTTAAAGGTG | NC_016157 Human papillomavirus | RP0664 | 664 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((((((((::::::::[[[[[[[[[::::))))))))))::::]]]]]]]]] - 1 records total | ||||
| Structure: ((((((((((:[[[[)))))))))):::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGGTAATAACTTGTTTGTTACCTTTTTGGATAA | NC_016157 Human papillomavirus | RP0672 | 672 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((((((((:[[[[)))))))))):::::]]]] - 1 records total | ||||
| Structure: (((((((((::[[[[)))))))))::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GTTATCTATCAATACATGGATGATTTGTAT | HIV K03455 | RP0598 | 598 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((((::[[[[)))))))))::]]]] - 1 records total | ||||
| Structure: (((((((((:[[[[[::::::)))))))))::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTC | HIV K03455 | RP0590 | 590 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((((:[[[[[::::::)))))))))::::]]]]] - 1 records total | ||||
| Structure: (((((((((:[[[[[[))))))))):::::::::::::::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AATAAGAGGCTTTGTATCTCTTATTGAATCTTTAGTAATAGGCATACAAA | C. botulinum NC_010520 | RP0657 | 657 | viral read though like KSPOS J.Lynn 04/19/2011 |
| Summary for Structure (((((((((:[[[[[[))))))))):::::::::::::::::::]]]]]] - 1 records total | ||||
| Structure: ((((((((:::[[)))))))):::::]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TGGTGCTACAAGCTAGTACCAGTTGAGC | HIV K03455 | RP0576 | 576 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| TGGTGCTACAAGCTAGTACCAGTTGAGC | HIV K03455 | RP0631 | 631 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((((:::[[)))))))):::::]] - 2 records total | ||||
| Structure: ((((((((::[[[[[:::::::::::::))))))))::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGAC | HIV K03455 | RP0618 | 618 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((((::[[[[[:::::::::::::))))))))::]]]]] - 1 records total | ||||
| Structure: ((((((((::[[[[[[[)))))))):::::::::::::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGTTCGGACCCCCTCCCCGAACCTAGGGTAACACTGACTGUGGAGGGG | M26927 gibbon ape leukemia virus | RP0209 | 209 | PKB-number: PKB79 Definition: Gag/pol translational readthrough site of gibbo More ... |
| Summary for Structure ((((((((::[[[[[[[)))))))):::::::::::::::::]]]]]]] - 1 records total | ||||
| Structure: ((((((((::[[[[[[[)))))))):::::::::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AATTACTTTTATTATTTAAGTAATTTGGCTTTTTATATAAATAAT | C. botulinum NC_010520 | RP0658 | 658 | viral read though like KSPOS J.Lynn 04/19/2011 |
| Summary for Structure ((((((((::[[[[[[[)))))))):::::::::::::]]]]]]] - 1 records total | ||||
| Structure: ((((((((:[[[[[[[)))):))))::::::::::::::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGTCAGGAGCCCCCCCCTGAACCCAGGATAACCCTCAAAGTCGGGGGGC | AF033811 Moloney murine leukemia virus | RP0172 | 172 | PKB-number: PKB47 Definition: Gag/pol translational readthrough site of Molone More ... |
| GGGTCAGGAGCCCCCCCCTGAACCCAGGATAACCCTCACTGTCGGGGGGC | J01998 AKV murine leukemia virus | RP0208 | 208 | PKB-number: PKB78 Definition: Gag/pol translational readthrough site of AKV m More ... |
| Summary for Structure ((((((((:[[[[[[[)))):))))::::::::::::::::::]]]]]]] - 2 records total | ||||
| Structure: (((((((:::::::::::[[[[))))))):::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GTCAACATAATTGGAAGAAATCTGTTGACTCAGATT | HIV K03455 | RP0594 | 594 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((:::::::::::[[[[))))))):::]]]] - 1 records total | ||||
| Structure: (((((((::::::[[[[[[[[))))))):::::::::::::::::]]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGG | HIV K03455 | RP0612 | 612 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((::::::[[[[[[[[))))))):::::::::::::::::]]]]]]]] - 1 records total | ||||
| Structure: (((((((:::::[[[:)))))))::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CTTGCTGAAGCGCGCACGGCAAGAGGCG | HIV K03455 | RP0581 | 581 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((:::::[[[:)))))))::]]] - 1 records total | ||||
| Structure: (((((((::::[[[[((((:::::((((((((:::::))))))))))))))))))):::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TGTGTCTTGGATCGCGCGGGTCAAATGTATATGGTTCATATACATCCGCAGGCACGTAATAAAGCGA | J02415 tobacco mosaic virus | RP0182 | 182 | PKB-number: PKB57 Definition: tRNA-like structure bulge pseudoknot of tobacco More ... |
| Summary for Structure (((((((::::[[[[((((:::::((((((((:::::))))))))))))))))))):::::::]]]] - 1 records total | ||||
| Structure: (((((((::::[[[[[)))))))::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TGTTCCTTGGGTTCTTGGGAGCAGCAGGAA | HIV K03455 | RP0621 | 621 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((::::[[[[[)))))))::]]]]] - 1 records total | ||||
| Structure: (((((((::::[[[[[[::)))))))::::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AGTGGGTCTCTAGGGGCACACCCACTACCCGCCGGCCCCT | AF033818 Bovine leukemia virus | RP0421 | 421 | >gi|2801494|gb|AF033818.1| Bovine leukemia virus complete genome Computational 0 More ... |
| Summary for Structure (((((((::::[[[[[[::)))))))::::::::]]]]]] - 1 records total | ||||
| Structure: (((((((::::[[[[[[::::))))))):::::::::::::::::::::::::::::::::::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTAGGTGTGAATATCAAGCAGG | HIV K03455 | RP0610 | 610 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((::::[[[[[[::::))))))):::::::::::::::::::::::::::::::::::::::]]]]]] - 1 records total | ||||
| Structure: (((((((::[[[))))))):::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTGAGAGACTTACTCTTGATTGTAA | HIV K03455 | RP0624 | 624 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((::[[[))))))):::]]] - 1 records total | ||||
| Structure: (((((((::[[[::::))))))):::::::::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCT | HIV K03455 | RP0589 | 589 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((((::[[[::::))))))):::::::::::]]] - 1 records total | ||||
| Structure: (((((((:[[)))))))::]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGCTTCCTGCGGAAGCCAGGC | NC_010317 Abaca bunchy top virus | RP0459 | 459 | >gi|167006430|ref|NC_010317.1| Abaca bunchy top virus DNA-M, complete genome Com More ... |
| Summary for Structure (((((((:[[)))))))::]] - 1 records total | ||||
| Structure: ((((((:(::[[[[[[[):))))))::::::::::::::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGTTCTCCCGCCCTCCGTGAACCCAGGCTAAAAGTTAAGGTAGGGGGGC | M54993 spleen necrosis virus | RP0173 | 173 | PKB-number: PKB48 Definition: Gag/pol translational readthrough site of spleen More ... |
| Summary for Structure ((((((:(::[[[[[[[):))))))::::::::::::::::::]]]]]]] - 1 records total | ||||
| Structure: ((((((:::::::::::::::::[[[[[::::::::))))))::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCC | HIV K03455 | RP0629 | 629 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((:::::::::::::::::[[[[[::::::::))))))::::]]]]] - 1 records total | ||||
| Structure: ((((((:::::::[[[[:::::)))))):::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TGTACAAGATATATACCGTTCATGTGCACAAGGTG | NC_016157 Human papillomavirus | RP0667 | 667 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((((:::::::[[[[:::::)))))):::]]]] - 1 records total | ||||
| Structure: ((((((::::::[[))))))::::]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGGGGACTTAGCGCCCCCCAAACCG | AF033818 Bovine leukemia virus | RP0416 | 416 | >gi|2801494|gb|AF033818.1| Bovine leukemia virus complete genome Computational 0 More ... |
| ACTCAGTATTGTGCCTGAGTGATGGC | X13063 Turnip yellows virus | RP0423 | 423 | >gi|62294|emb|X13063.1| Turnip yellows virus (BWYV-FL1) genomic RNA Computationa More ... |
| Summary for Structure ((((((::::::[[))))))::::]] - 2 records total | ||||
| Structure: ((((((:::::[[[))))))::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGGGGACTTAGCGCCCCCCAAACCGT | AF033818 Bovine Leukemia Virus | RP0080 | 80 | PKB-number: PKB1 Definition: Gag/pro ribosomal frameshift site of Bovine Leuke More ... |
| ACTCAGTATTGTGCCTGAGTGATGGCA | X13063 Turnip yellows virus | RP0101 | 101 | >gi|62294|emb|X13063.1| Turnip yellows virus (BWYV-FL1) genomic RNA12-25-08 Jame More ... |
| CCACACAAATAATTGTGTGGTCCCAAT | Chayote yellow mosaic virus NC_004618 | RP0441 | 441 | >gi|29028717|ref|NC_004618.1| Chayote yellow mosaic virus, complete genome Compu More ... |
| Summary for Structure ((((((:::::[[[))))))::::]]] - 3 records total | ||||
| Structure: ((((((:::::[[[[[:))))))::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CTGGGGATTTGGGGTTGCTCTGGAAAACTC | HIV K03455 | RP0623 | 623 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((:::::[[[[[:))))))::]]]]] - 1 records total | ||||
| Structure: ((((((::::[[[))))))::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGCATCACACACAGATGCTGATGT | NC_016157 Human papillomavirus | RP0669 | 669 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((((::::[[[))))))::]]] - 1 records total | ||||
| Structure: ((((((:::[[[[))))))::::::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GAGACCTCCAGTGGGTCTCTAGGGGCACACCCACT | Bovine Leukemia Virus AF033818 | RP0102 | 102 | M0002 Bovine Leukemia Virus AF033818 James F. Lynn 12-25-08 ((((((:::[[[[)))))) More ... |
| GGGGCTCAAGGGAGGCCCCAGAAACAAACTTTCCC | AF033820 Equine Infectious Anemic Virus | RP0082 | 82 | PKB-number: PKB3 Definition: Gag-pol ribosomal frameshift site of Equine Infec More ... |
| Summary for Structure ((((((:::[[[[))))))::::::::::::]]]] - 2 records total | ||||
| Structure: ((((((:::[[[[)))))):::::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTTCAGGTGGCGTCTGAAAAGACTCGCCAGACGC | Bovine Leukemia Virus AF033818 | RP0103 | 103 | M0003 Bovine Leukemia Virus AF033818 James F. Lynn 12-25-08 ((((((:::[[[[)))))) More ... |
| Summary for Structure ((((((:::[[[[)))))):::::::::::]]]] - 1 records total | ||||
| Structure: ((((((:::[[[[::))))))::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TCCGGGATTGATCACCCCGGAACCCTAACGATC | AF033818 Bovine leukemia virus | RP0422 | 422 | >gi|2801494|gb|AF033818.1| Bovine leukemia virus complete genome Computational 0 More ... |
| Summary for Structure ((((((:::[[[[::))))))::::::::]]]] - 1 records total | ||||
| Structure: ((((((:::[[[[[[[:))))))::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GTAGTTTCAGCTTTTGCAGCTGCGACAGAAGT | NC_016157 Human papillomavirus | RP0662 | 662 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((((:::[[[[[[[:))))))::]]]]]]] - 1 records total | ||||
| Structure: ((((((:::[[[[[[[::::::)))))):::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AAACATGAGTATGGCAGAATGGGTGTTTAAATGCTGTA | NC_016157 Human papillomavirus | RP0663 | 663 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((((:::[[[[[[[::::::)))))):::]]]]]]] - 1 records total | ||||
| Structure: ((((((:::[[[[[[[[:::::)))))):::::]]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| ACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTG | HIV K03455 | RP0619 | 619 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((:::[[[[[[[[:::::)))))):::::]]]]]]]] - 1 records total | ||||
| Structure: ((((((::[[[[))))))::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTCCGGTCGACTCCGGAGAAACAAAGTC | L04573 pea enation mosaic virus | RP0170 | 170 | PKB-number: PKB45 Definition: ORF2/ORF3 (putative RNA-dependent RNA polymeras More ... |
| GAGTCCATAATTGGACTCATTCAAAATT | Australian bat lyssavirus AF418014 | RP0434 | 434 | >gi|22726511|gb|AF418014.1| Australian bat lyssavirus, complete genome LOCUS More ... |
| Summary for Structure ((((((::[[[[))))))::::::]]]] - 2 records total | ||||
| Structure: ((((((::[[[[[::::)))))):::::::::::::::::::::::::::::::::::::::::::::::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGA | HIV K03455 | RP0596 | 596 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((::[[[[[::::)))))):::::::::::::::::::::::::::::::::::::::::::::::::::]]]]] - 1 records total | ||||
| Structure: ((((((:[[)))))):::]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TACAAGGAGCTTGTAGAGCT | HIV K03455 | RP0626 | 626 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((:[[)))))):::]] - 1 records total | ||||
| Structure: ((((((:[[[))))))::::::::::::::::::::::::::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGC | HIV K03455 | RP0614 | 614 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((:[[[))))))::::::::::::::::::::::::::::]]] - 1 records total | ||||
| Structure: ((((((:[[[[)))))):::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TAACGTTGATAGTGTTGAACTATC | U34586 odontoglossum ringspot virus | RP0181 | 181 | PKB-number: PKB56 Definition: Pseudoknot PK1 of the upstream pseudoknot domain More ... |
| Summary for Structure ((((((:[[[[)))))):::]]]] - 1 records total | ||||
| Structure: ((((((:[[[[:[[[::::)))))):::::]]]:]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GAGGATTACTTGAATTACGGAATTCTGAGGAATTCAAG | NC_010319 Abaca bunchy top virus | RP0457 | 457 | >gi|167006434|ref|NC_010319.1| Abaca bunchy top virus DNA-R, complete genome Com More ... |
| Summary for Structure ((((((:[[[[:[[[::::)))))):::::]]]:]]]] - 1 records total | ||||
| Structure: ((((((:[[[[[[[::::::::::::))))))::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAG | HIV K03455 | RP0588 | 588 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((((:[[[[[[[::::::::::::))))))::::::]]]]]]] - 1 records total | ||||
| Structure: (((((::::::::::::::::::[[[[[::::))))):::::::::::::::::::::::::::::::::::::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAG More ... | HIV K03455 | RP0586 | 586 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((::::::::::::::::::[[[[[::::))))):::::::::::::::::::::::::::::::::::::::::]]]]] - 1 records total | ||||
| Structure: (((((:::::::::::::::::[[[[[)))))::::::::::::::::::::::::::::::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| ATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCC | HIV K03455 | RP0603 | 603 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:::::::::::::::::[[[[[)))))::::::::::::::::::::::::::::::::::]]]]] - 1 records total | ||||
| Structure: (((((::::::::::[[[[[[))))):::::::::::::::::::::::::::::::::::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCT | HIV K03455 | RP0615 | 615 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((::::::::::[[[[[[))))):::::::::::::::::::::::::::::::::::::::]]]]]] - 1 records total | ||||
| Structure: (((((::::::::[[[[:))))):::::::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTA | HIV K03455 | RP0602 | 602 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((::::::::[[[[:))))):::::::::::::]]]] - 1 records total | ||||
| Structure: (((((:::::[[[)))))::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AAAGAAATAGCTGTCTTTTATCCAG | >gi|2828036|gb|AF038398.1|AF038398 Simian-Human im | RP0116 | 116 | M0016 >gi|2828036|gb|AF038398.1|AF038398 Simian-Human immunodeficiency virus st More ... |
| GGATTTCTTCAATAATCCCCCCATT | NC_009597 Pyrococcus abyssi virus | RP0295 | 295 | method: computational James F. Lynn 10-23-2009 >gi|149274319|ref|NC_009597.1| P More ... |
| AATTAACAAATTATAATTGGCTTAA | AJ577589 Human echovirus 11 | RP0329 | 329 | computational-sequence comparison James F. lynn 08-19-2009 >AJ577589 ~7312-7433 |
| GATATTGGAGTGAATATCTTGATCA | NC_007193 Chaetoceros salsugineum | RP0362 | 362 | method: computational James F. Lynn 10-23-2009 >gi|86476036|ref|NC_007193.2| Cha More ... |
| GGGGGCCGGAGGCCCCCCGGTGGCC | NC_001427 Chicken anemia virus | RP0377 | 377 | method: computational James F. Lynn 10-25-09 >gi|9626429|ref|NC_001427.1| Chicke More ... |
| Summary for Structure (((((:::::[[[)))))::::]]] - 5 records total | ||||
| Structure: (((((:::::[[[::)))))::::::::::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TAGAGGATCAGCCGACTCTATAAATATAGGGAGGC | NC_010317 Abaca bunchy top virus | RP0460 | 460 | >gi|167006430|ref|NC_010317.1| Abaca bunchy top virus DNA-M, complete genome Com More ... |
| GTATTTAAATATTTAAATACCAAACCTTAAGGAAT | NC_010315 Abaca bunchy top virus segment 2 | RP0462 | 462 | >gi|167006427|ref|NC_010315.1| Abaca bunchy top virus segment 2, complete sequen More ... |
| TATATTAAATATAACATATAAAATATATAAGGTAT | NC_010315 Abaca bunchy top virus segment 2 | RP0463 | 463 | >gi|167006427|ref|NC_010315.1| Abaca bunchy top virus segment 2, complete sequen More ... |
| GCGGCTACCGCAGGTGCCGCGCGAGCGGCGTACTG | AF009606 Hepatitis C virus | RP0464 | 464 | Computational James F. Lynn 05/30/2010 >gi|2316097|gb|AF009606.1|AF009606 Hepati More ... |
| TTGAGGAGCTTGCTGCTCAAGAACTAATAGCAGCA | AF218039 Cricket paralysis virus | RP0465 | 465 | Computational James F. Lynn 05/30/2010 >gi|8895506|gb|AF218039.1|AF218039 Cricke More ... |
| ATGTTAACAAGAATGAACATTTCTGATCTTACTTC | DQ113899 Adult diarrheal rotavirus | RP0466 | 466 | Computational James F. Lynn 05/30/2010 >gi|69145430|gb|DQ113899.1| Adult diarrhe More ... |
| TGTTAAGAACCTGTTTAACACTTTCACAATGTCAG | EU420138 Bat coronavirus | RP0467 | 467 | >gi|169260919|gb|EU420138.1| Bat coronavirus 1A strain AFCD62, complete genome C More ... |
| Summary for Structure (((((:::::[[[::)))))::::::::::::]]] - 7 records total | ||||
| Structure: (((((:::::[[[[))))):::::::::::::::::::::::::::::::::::::::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGC | HIV K03455 | RP0578 | 578 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| CCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGC | HIV K03455 | RP0633 | 633 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:::::[[[[))))):::::::::::::::::::::::::::::::::::::::::::::]]]] - 2 records total | ||||
| Structure: (((((:::::[[[[[::)))))::::::::::::::::::::::::::::::::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCT | HIV K03455 | RP0601 | 601 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:::::[[[[[::)))))::::::::::::::::::::::::::::::::::::]]]]] - 1 records total | ||||
| Structure: (((((:::::[[[[[::)))))::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| ATATAGGTGATCCAGAATATATAGAACTGGA | NC_016157 Human papillomavirus | RP0670 | 670 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure (((((:::::[[[[[::)))))::::]]]]] - 1 records total | ||||
| Structure: (((((::::[[[[[))))):::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GTAGCAATACAGCAGCTACCAATGCTG | HIV K03455 | RP0628 | 628 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((::::[[[[[))))):::]]]]] - 1 records total | ||||
| Structure: (((((::::[[[[[:)))))::::::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GCTCTATTAGATACAGGAGCAGATGATACAGTATT | HIV K03455 | RP0592 | 592 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((::::[[[[[:)))))::::::::::]]]]] - 1 records total | ||||
| Structure: (((((::::[[[[[[[[[)))))::::::::::::::::::::::::::::::::]]]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| ACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGATACCCATGT | HIV K03455 | RP0583 | 583 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((::::[[[[[[[[[)))))::::::::::::::::::::::::::::::::]]]]]]]]] - 1 records total | ||||
| Structure: (((((:::[[[[:))))):::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| ATGCGATAACACGTGCATGGAAAGTGT | H1N1 HA HM624086 | RP0647 | 647 | H1N1 HA HM624086 >gi|300117091|gb|HM624086.1| Influenza A virus (A/Perth/260/20 More ... |
| Summary for Structure (((((:::[[[[:))))):::::]]]] - 1 records total | ||||
| Structure: (((((:::[[[[:)))))::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TGCGATAACACGTGCATGGAAAGTGT | H1N1 HA HM624086 | RP0649 | 649 | H1N1 HA HM624086 >gi|300117091|gb|HM624086.1| Influenza A virus (A/Perth/260/20 More ... |
| Summary for Structure (((((:::[[[[:)))))::::]]]] - 1 records total | ||||
| Structure: (((((:::[[[[[[[))))):::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTG More ... | HIV K03455 | RP0604 | 604 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:::[[[[[[[))))):::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::]]]]]]] - 1 records total | ||||
| Structure: (((((::[[[)))))::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AGGCCATCGCGGCCTACCGGCG | CP001807 Rhodothermus marinus | RP0552 | 552 | >gb|CP001807.1| Rhodothermus marinus DSM 4252, complete genome Length=3261604 M More ... |
| Summary for Structure (((((::[[[)))))::::]]] - 1 records total | ||||
| Structure: (((((::[[[:)))))::::::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGCGGCGGCGACCGCCGAAACAACCGC | X76931 cucurbit aphid-borne yellows virus | RP0169 | 169 | PKB-number: PKB44 Definition: ORF2/ORF3 (putative RNA-dependent RNA polymeras More ... |
| GAAAACTTTTTTTTTCCGCTAGTAAAA | DQ192570 Crow polyomavirus | RP0270 | 270 | >gi|77820254|gb|DQ192570.1| Crow polyomavirus, complete genome Computational J More ... |
| TGCATACGATAATGCATAGTGGCTATC | X82130 Odontoglossum ringspot virus | RP0267 | 267 | >gi|558231|emb|X82130.1| Odontoglossum ringspot virus RNA for replicase, moveme More ... |
| TGTACACGATAGTACATAGTGTTTATC | X82130 Odontoglossum ringspot virus | RP0268 | 268 | >gi|558231|emb|X82130.1| Odontoglossum ringspot virus RNA for replicase, moveme More ... |
| ATCTGGAATATCAGATAGGATACATAT | CY043336.1| Influenza A virus | RP0278 | 278 | >gi|255103456|gb|CY043336.1| Influenza A virus (A/Denmark/523/2009(H1N1)) segme More ... |
| TAATTAGAACTAATTATGTGAATGGTT | DQ113897.1| Adult diarrheal rotavirus | RP0287 | 287 | >gi|69145385|gb|DQ113897.1| Adult diarrheal rotavirus strain J19 VP1 Computatio More ... |
| ATGGGGACAGCCCCATGGTGGTGGCTG | M33958 | RP0303 | 303 | >M33958 computational-sequence comparison James F. lynn 08-19-2009 |
| CGGGGGGGGGGCCCCGGGGGGTCCCCC | NC_001944 Beak and feather disease virus | RP0371 | 371 | method: computational James F. Lynn 10-25-09 >gi|9630729|ref|NC_001944.1| Beak a More ... |
| AGTCCATAATTGGACTCATTCAAAATT | AF418014 Australian bat lyssavirus | RP0442 | 442 | >gi|22726511|gb|AF418014.1| Australian bat lyssavirus, complete genome LOCUS More ... |
| TCTCTCAGATCAGAGATCTTTTCAATC | AF418014 Australian bat lyssavirus | RP0443 | 443 | >gi|22726511|gb|AF418014.1| Australian bat lyssavirus, complete genome LOCUS More ... |
| Summary for Structure (((((::[[[:)))))::::::::]]] - 10 records total | ||||
| Structure: (((((::[[[:[[))))):::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CGAGAAGGAGATCTCTCGTAAATAAGACTC | U68079 Legionella pneumophila | RP0205 | 205 | PKB-number: PKB67 Definition: Pseudoknot PK1 of Legionella pneumophila tmRNA More ... |
| Summary for Structure (((((::[[[:[[))))):::::::]]]]] - 1 records total | ||||
| Structure: (((((::[[[[)))))::::::::::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTCCACAGGGATGGAAAGGATCACCAGCAATATTCC | HIV K03455 | RP0597 | 597 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((::[[[[)))))::::::::::::::::]]]] - 1 records total | ||||
| Structure: (((((::[[[[))))):::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGCGGCGGCGTCCGCCGTAACAAACGC | L25299 barley yellow dwarf virus | RP0171 | 171 | PKB-number: PKB46 Definition: ORF2/ORF3 (putative RNA-dependent RNA polymerase More ... |
| Summary for Structure (((((::[[[[))))):::::::]]]] - 1 records total | ||||
| Structure: (((((::[[[[)))))::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CGCGGCACCGTCCGCGGAACAAACGG | X13063 Beet Western-Yellows Virus | RP0081 | 81 | PKB-number: PKB2 Modification: 1999-6-21 Definition: Orf2-orf3 ribosomal f More ... |
| Summary for Structure (((((::[[[[)))))::::::]]]] - 1 records total | ||||
| Structure: (((((::[[[[[))))):::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CTGGAGGAACAATCCAGCGGATATTTGTT | NC_007193 Chaetoceros salsugineum | RP0361 | 361 | method: computational James F. Lynn 10-23-2009 >gi|86476036|ref|NC_007193.2| Cha More ... |
| Summary for Structure (((((::[[[[[))))):::::::]]]]] - 1 records total | ||||
| Structure: (((((::[[[[[[))))):::::::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGGCGAGCTGCAGCCCCAGTGAATCAAATGCAGC | M25381 Feline Immunodeficiency Virus | RP0083 | 83 | PKB-number: PKB4 Definition: Gag-pol ribosomal frameshift site of Feline Imm More ... |
| Summary for Structure (((((::[[[[[[))))):::::::::::]]]]]] - 1 records total | ||||
| Structure: (((((:[[))))):::::::::::::]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CTTCTGGGAAGTTCAATTAGGAATACCA | HIV K03455 | RP0595 | 595 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:[[))))):::::::::::::]] - 1 records total | ||||
| Structure: (((((:[[[))))):::::::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCTCGACCTTGAGGGAATGCTAAAGG | NC_009597 Pyrococcus abyssi virus | RP0332 | 332 | method: computational James F. Lynn 10-23-2009 >gi|149274319|ref|NC_009597.1| P More ... |
| Summary for Structure (((((:[[[))))):::::::::]]] - 1 records total | ||||
| Structure: (((((:[[[)))))::::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCTTTATCTGAGGGTCTACCAGA | NC016157 Human papillomavirus | RP0660 | 660 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure (((((:[[[)))))::::::]]] - 1 records total | ||||
| Structure: (((((:[[[))))):::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCCTCTTCCGAGGGTCATCGGA | X16378 turnip yellow mosaic virus | RP0512 | 512 | Computational James F. Lynn 06/05/2010 KSPOS |
| CCCTTTTCCGAGGGTCATCGGA | pdb 1A60 Chain A, Nmr Structure Of A Classical Pse | RP0558 | 558 | >pdb|1A60|A Chain A, Nmr Structure Of A Classical Pseudoknot: Interplay Of Sin More ... |
| CCCTTTTCCGAGGGTCATCGGA | AF035403 Turnip yellow mosaic Blue Lake isolat | RP0559 | 559 | >gb|AF035403.1| Turnip yellow mosaic Blue Lake isolate, complete genome Length= More ... |
| CCCTTTTCCGAGGGTCATCGGA | TYU88850 Turnip yellow mosaic virus variant Q18 | RP0560 | 560 | >gb|U88850.1|TYU88850 Turnip yellow mosaic virus variant Q18, virion protein (V More ... |
| CCCTTTTCCGAGGGTCATCGGA | M58313 Andean potato latent virus | RP0561 | 561 | >gb|M58313.1|EMVRRLSZ Andean potato latent virus (APLV) 3' terminus tRNA-like s More ... |
| Summary for Structure (((((:[[[))))):::::]]] - 5 records total | ||||
| Structure: (((((:[[[)))))::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GTTGAAGGCTCAACATGGGCT | NC_016157 Human papillomavirus | RP0668 | 668 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure (((((:[[[)))))::::]]] - 1 records total | ||||
| Structure: (((((:[[[))))):::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GTGCTATGGGGCATTCACCA | H1N1 HA HM624086 | RP0645 | 645 | H1N1 HA HM624086 >gi|300117091|gb|HM624086.1| Influenza A virus (A/Perth/260/20 More ... |
| Summary for Structure (((((:[[[))))):::]]] - 1 records total | ||||
| Structure: (((((:[[[[))))):::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGTTGTGCTCCAGCCTTAGGGC | NC_016157 Human papillomavirus | RP0671 | 671 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure (((((:[[[[))))):::]]]] - 1 records total | ||||
| Structure: (((((:[[[[:))))):::::::::::::::::::::::::::::::::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAG | HIV K03455 | RP0609 | 609 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:[[[[:))))):::::::::::::::::::::::::::::::::::::::]]]] - 1 records total | ||||
| Structure: (((((:[[[[:)))))::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TGCAGGGCCTATTGCACCAGGC | HIV K03455 | RP0585 | 585 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:[[[[:)))))::]]]] - 1 records total | ||||
| Structure: (((((:[[[[::::)))))::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TAAGCCTCAATAAAGCTTGCCTTGA | HIV K03455 | RP0580 | 580 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| TAAGCCTCAATAAAGCTTGCCTTGA | HIV K03455 | RP0635 | 635 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:[[[[::::)))))::]]]] - 2 records total | ||||
| Structure: (((((:[[[[[::))))):::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TATGATCAGATACTCATAGAAATCTG | HIV K03455 | RP0593 | 593 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:[[[[[::))))):::]]]]] - 1 records total | ||||
| Structure: (((((:[[[[[[)))))::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AGCTTAAGAATGAAGCTGTTAGACATTTT | HIV K03455 | RP0611 | 611 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure (((((:[[[[[[)))))::::::]]]]]] - 1 records total | ||||
| Structure: (((((:[[[[[[::))))):::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CGAGGGGCGGTTGGCCTCGTAAAAAGCCGC | U68074 E.coli | RP0174 | 174 | PKB-number: PKB49 Definition: Pseudoknot PK1 of E.coli tmRNA Organism: E.coli More ... |
| GCGCCCCTTTGGGGGGCGCAAAGTCCAAAG | GU979419 Spissistilus festinus virus | RP0530 | 530 | >gi|300432042|gb|GU979419.1| Spissistilus festinus virus 1, complete genome Comp More ... |
| Summary for Structure (((((:[[[[[[::))))):::::]]]]]] - 2 records total | ||||
| Structure: (((((:[[[[[[[)))))::::::::::::::::::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TCAGGAGCCCCCCCCTGAACCCAGGATAACCCTCAAAGTCGGGGGGC | DQ399707 Xenotropic MuLV | RP0659 | 659 | >gi|88765817|gb|DQ399707.1| Xenotropic MuLV-related virus VP62, complete genome More ... |
| Summary for Structure (((((:[[[[[[[)))))::::::::::::::::::::::]]]]]]] - 1 records total | ||||
| Structure: (((((:[[[[[[[))))):::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TGACCAGCTATGAGGTCATACATCGTCATAGC | X12460 T2 bacteriophage | RP0206 | 206 | PKB-number: PKB73 Definition: Pseudoknot of the regulatory region of bacterio More ... |
| Summary for Structure (((((:[[[[[[[))))):::::::]]]]]]] - 1 records total | ||||
| Structure: (((((:[[[[[[[:)))))::::::::]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGGGCAGTCCCCTAGCCCCGCTCAAAAGGGGGAT | AF033807 mouse mammary tumor viru | RP0210 | 210 | PKB-number: PKB80 Definition: Gag/pro ribosomal frameshift site of mouse mamm More ... |
| Summary for Structure (((((:[[[[[[[:)))))::::::::]]]]]]] - 1 records total | ||||
| Structure: ((((...[[[[))))....]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CGCTGAAACGGAGCGATATCCGT | X78602 peanut clump virus | RP0563 | 563 | PKB-number PKB33 Definition:tRNA-like structure 3'end pseudoknot of RNA1 X78602 More ... |
| Summary for Structure ((((...[[[[))))....]]]] - 1 records total | ||||
| Structure: ((((:::(((((:[[[[[))))):::)))):::::::::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGC | U68074 E.coli | RP0176 | 176 | PKB-number: PKB51 Definition: Pseudoknot PK3 of E.coli tmRNA Organism: E.coli More ... |
| Summary for Structure ((((:::(((((:[[[[[))))):::)))):::::::::::]]]]] - 1 records total | ||||
| Structure: ((((::::::::::::::[[:[[:)))):::::]]:]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CATGGTGGTGGCTGGGGGCAACCCCATGGTGGCGGCTG | AY765383 Brachyteles arachnoides prion | RP0650 | 650 | >gb|AY765383.1| Brachyteles arachnoides prion protein (PrP) gene, partial cdsSe More ... |
| CATGGTGGTGGCTGGGGGCAACCCCATGGTGGCGGCTG | U15164 APU15164 Ateles paniscus | RP0653 | 653 | >gb|U15164.1|APU15164 Ateles paniscus x Ateles fusciceps major prion protein pr More ... |
| Summary for Structure ((((::::::::::::::[[:[[:)))):::::]]:]] - 2 records total | ||||
| Structure: ((((::::::::::::::[[[[[:)))):::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CATGGTGGCGGCTGGGGGCAGCCCCATGGTGGCGGCTG | U08309 geoffroyi prion | RP0307 | 307 | >gi|474376|gb|U08309.1|AGU08309 Ateles geoffroyi prion protein gene, partial cd More ... |
| CATGGTGGTGGCTGGGGGCAGCCCCATGGTGGTGGCTG | NM_000311.3| Homo sapiens prion | RP0313 | 313 | computational-sequence comparison James F. lynn 08-26-2009 >ref|NM_000311.3| Ho More ... |
| CATGGTGGTGGCTGGGGGCAGCCTCATGGTGGTGGCTG | NM_000311.3| Homo sapiens prion protein | RP0314 | 314 | computational-sequence comparison James F. lynn 08-26-2009 >ref|NM_000311.3| Ho More ... |
| CATGGTGGTGGCTGGGGACAGCCTCATGGTGGTGGCTG | NM_000311 Homo sapiens prion protein | RP0315 | 315 | computational-sequence comparison James F. lynn 08-26-2009 >ref|NM_000311.3| Ho More ... |
| CATGGTGGTGGCTGGGGGCAGCCCCATGGTGGTGGCTG | NM_000311.3| Homo sapiens prion protein | RP0316 | 316 | computational-sequence comparison James F. lynn 08-26-2009 >ref|NM_000311.3| Ho More ... |
| CATGGTGGCGGCTGGGGGCAGCCCCATGGTGGCGGCTG | AY765383 Brachyteles arachnoides prion | RP0651 | 651 | >gb|AY765383.1| Brachyteles arachnoides prion protein (PrP) gene, partial cdsSe More ... |
| CATGGTGGCGGCTGGGGGCAGCCCCATGGTGGCGGCTG | U15164 APU15164 Ateles paniscus | RP0652 | 652 | >gb|U15164.1|APU15164 Ateles paniscus x Ateles fusciceps major prion protein pr More ... |
| CATGGTGGCGGCTGGGGGCAGCCCCATGGTGGCGGCTG | U08309 AGU08309 Ateles geoffroyi prion | RP0654 | 654 | >gb|U08309.1|AGU08309 Ateles geoffroyi prion protein gene, partial cdsSeq compa More ... |
| CATGGTGGCGGCTGGGGACAGCCTCATGGTGGTGGCTG | U08309 AGU08309 Ateles geoffroyi prion | RP0655 | 655 | >gb|U08309.1|AGU08309 Ateles geoffroyi prion protein gene, partial cdsSeq compa More ... |
| CATGGTGGCGGCTGGGGACAGCCCCATGGTGGCGGCTG | XM_002747325 Callithrix jacchus | RP0656 | 656 | >ref|XM_002747325.1| PREDICTED: Callithrix jacchus major prion protein-like, tr More ... |
| Summary for Structure ((((::::::::::::::[[[[[:)))):::::]]]]] - 10 records total | ||||
| Structure: ((((:::::::::::[[[[[:)))):::::]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GAGGACACCACCACCGGGGAACCTTCCACCTCCCT | NC_016157 Human papillomavirus | RP0665 | 665 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((:::::::::::[[[[[:)))):::::]]]]] - 1 records total | ||||
| Structure: ((((::::::::::[[[[[[:::))))::::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTT | HIV K03455 | RP0599 | 599 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((::::::::::[[[[[[:::))))::::::::]]]]]] - 1 records total | ||||
| Structure: ((((::::::::[[[[[[::)))):::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CTACAAATATTTCTGTGCAGGTAGAGACAGAGCATAG | NC_016157 Human papillomavirus | RP0661 | 661 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((::::::::[[[[[[::)))):::::::]]]]]] - 1 records total | ||||
| Structure: ((((::::::[[[[[[[[))))::]]]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AGCCTTTGTACCGGGAGTGGTTGCATTTTTGG | NC_016157 Human papillomavirus | RP0674 | 674 | >gi|358356460|ref|NC_016157.1| Human papillomavirus type 126, complete genome Ja More ... |
| Summary for Structure ((((::::::[[[[[[[[))))::]]]]]]]] - 1 records total | ||||
| Structure: ((((:::::[[[))))::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTTGTTTCATAACAAAAGCCTTA | >gi|2828036|gb|AF038398.1|AF038398 Simian-Human im | RP0117 | 117 | M0017 >gi|2828036|gb|AF038398.1|AF038398 Simian-Human immunodeficiency virus st More ... |
| GCCCGTTCAAGGGGGCTCAGCCT | NC_009597 Pyrococcus abyssi virus | RP0297 | 297 | method: computational James F. Lynn 10-23-2009 >gi|149274319|ref|NC_009597.1| P More ... |
| ACCTGGAGGAGGAGGTTTTGCCT | NC_007014 Small anellovirus 2 | RP0369 | 369 | method: computational James F. Lynn 10-25-09 >gi|66391753|ref|NC_007014.1| Small More ... |
| CCCCCCCCTGGGGGGGATTCCCC | NC_001427 Chicken anemia virus | RP0382 | 382 | method: computational James F. Lynn 10-25-09 >gi|9626429|ref|NC_001427.1| Chicke More ... |
| ATTGATGGCCAGCAATTCCTCTG | 52352969 ebolavirus | RP0390 | 390 | >gi|52352969|gb|AY729654.1| Sudan ebolavirus strain Gulu, complete genome James More ... |
| GAAATTTTTCTTTTTCATTGAAG | 52352969 ebolavirus | RP0401 | 401 | >gi|52352969|gb|AY729654.1| Sudan ebolavirus strain Gulu, complete genome James More ... |
| TTGGGTCTCCATCCAAAATCATG | AF418014 Australian bat lyssavirus | RP0444 | 444 | >gi|22726511|gb|AF418014.1| Australian bat lyssavirus, complete genome LOCUS More ... |
| CACACCCACCCGTGTGTGTTCGG | GU979419 Spissistilus festinus virus | RP0529 | 529 | >gi|300432042|gb|GU979419.1| Spissistilus festinus virus 1, complete genome Comp More ... |
| Summary for Structure ((((:::::[[[))))::::]]] - 8 records total | ||||
| Structure: ((((:::::[[[[))))::::::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AGACCTCCAGTGGGTCTCTAGGGGCACACCCAC | Bovine Leukemia Virus AF033818 | RP0112 | 112 | M0012 Bovine Leukemia Virus AF033818 James F. Lynn 12-25-08 ((((:::::[[[[)))): More ... |
| AATTTACTTTTTCAATTGATGAAAATTGTGAAA | DQ249299 Duck hepatitis virus | RP0272 | 272 | >gi|82468324|gb|DQ249299.1| Duck hepatitis virus 1 strain 03D, complete sequenc More ... |
| CAGGTACCATAAACCTGTTTTTCCTGGGTTTTA | DQ249299 Duck hepatitis virus | RP0273 | 273 | >gi|82468324|gb|DQ249299.1| Duck hepatitis virus 1 strain 03D, complete sequenc More ... |
| TTTCTCGTCGGAAGAAAATATGCTGAGCTTTCC | NC_009597 Pyrococcus abyssi virus | RP0296 | 296 | method: computational James F. Lynn 10-23-2009 >gi|149274319|ref|NC_009597.1| P More ... |
| CTCTTTTTAAATTAGAGACAATTTGAACTAATT | AF085363 | RP0328 | 328 | computational-sequence comparison James F. lynn 08-19-2009 AF085363 ~7286-7411 |
| CTCTTTTTAAATTAGAGACAATTTGAACTAATT | M16560 | RP0327 | 327 | computational-sequence comparison James F. lynn 08-19-2009 >M16560/7270-7389 |
| CTCCTTCTAAATTGGAGACAATTTGAAATAATT | AY302556 Human echovirus 33 | RP0330 | 330 | computational-sequence comparison James F. lynn 08-19-2009 >AY302556 ~7274-7394 |
| CTCTTTTTAAATTAGAGACAATTTGAAATAATT | AF241359 | RP0321 | 321 | computational-sequence comparison James F. lynn 08-19-2009 >AF241359 ~7291-7411 |
| AACCTGAATCCCAGGTTGATGAAGCGGGATGGG | GU979419 Spissistilus festinus virus | RP0531 | 531 | >gi|300432042|gb|GU979419.1| Spissistilus festinus virus 1, complete genome Comp More ... |
| Summary for Structure ((((:::::[[[[))))::::::::::::]]]] - 9 records total | ||||
| Structure: ((((:::::[[[[)))):::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GGTGGAGATGGGGCACCATGCTCC | HIV K03455 | RP0616 | 616 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((:::::[[[[)))):::]]]] - 1 records total | ||||
| Structure: ((((:::::[[[[[))))::::::]:]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| AGTGTTTTTCCCTCCACTTAAATCGAAGGG | J02415 tobacco mosaic virus | RP0180 | 180 | PKB-number: PKB55 Definition: Pseudoknot PK3 of the upstream pseudoknot domain More ... |
| AGTGTTTGTCCCTCCACTTAAATCGAAGGG | U34586 odontoglossum ringspot virus | RP0183 | 183 | PKB-number: PKB58 Definition: Pseudoknot PK3 of the upstream pseudoknot domain More ... |
| AGTGTTTATCCCTCCACTTGAATCGAAGGG | U34586 odontoglossum ringspot virus | RP0185 | 185 | PKB-number: PKB60 Definition: Pseudoknot PK3 of the upstream pseudoknot domain More ... |
| AGTGGTTATCCCTCCACTTAAATCGAAGGG | U34586 odontoglossum ringspot virus | RP0203 | 203 | PKB-number: PKB62 Definition: Pseudoknot PK3 of the upstream pseudoknot domain More ... |
| AGTGTTTTTCCCTCCACTTAAATCGAAGGG | X02144 tobacco mosaic virus | RP0214 | 214 | PKB-number: PKB84 Definition: Pseudoknot PK3 of the upstream pseudoknot domai More ... |
| Summary for Structure ((((:::::[[[[[))))::::::]:]]]] - 5 records total | ||||
| Structure: ((((::::[[[[))))::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCAGATCTGAGCCTGGGAGCTC | HIV K03455 | RP0579 | 579 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| CCAGATCTGAGCCTGGGAGCTC | HIV K03455 | RP0634 | 634 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((::::[[[[))))::]]]] - 2 records total | ||||
| Structure: ((((::::[[[[[[))))::::::::]]]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| CCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGC | HIV K03455 | RP0606 | 606 | >B.FR.83.HXB2_LAI_IIIB_BRT.K03455 9719 HIV K03455 Computational James F. Lynn More ... |
| Summary for Structure ((((::::[[[[[[))))::::::::]]]]]] - 1 records total | ||||
| Structure: ((((:::[[[))))::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GAGCAATTGAGCTCAGTGTCA | H1N1 HA HM624086 | RP0644 | 644 | H1N1 HA HM624086 >gi|300117091|gb|HM624086.1| Influenza A virus (A/Perth/260/20 More ... |
| Summary for Structure ((((:::[[[))))::::]]] - 1 records total | ||||
| Structure: ((((:::[[[:::)))):::::::::]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| GATTGTTTTTCAGAATCTGCTATAAGAAA | A07108 HIV | RP0014 | 14 | >A07108Human immunodeficiency virus type 1 (LAV.ELI) proviral DNA.James F.Lynn 0 More ... |
| AGCATCCCCCAGCTGCTTCAGGTGCAGGG | DQ192570 Crow polyomavirus | RP0271 | 271 | >gi|77820254|gb|DQ192570.1| Crow polyomavirus, complete genome Computational J More ... |
| CCTCCTCGTTATCGAGGAGGCTTCAGAAC | NC_007193 Chaetoceros salsugineum | RP0360 | 360 | method: computational James F. Lynn 10-23-2009 >gi|86476036|ref|NC_007193.2| Cha More ... |
| AAGGTACTGGGACCCTTACTGTCCCTCCA | 52352969 ebolavirus | RP0393 | 393 | >gi|52352969|gb|AY729654.1| Sudan ebolavirus strain Gulu, complete genome James More ... |
| CAAAAGTATACTGTTTGAACCCCTAGTAT | 52352969 ebolavirus | RP0399 | 399 | >gi|52352969|gb|AY729654.1| Sudan ebolavirus strain Gulu, complete genome James More ... |
| TTCAGACATTGCGTGAACTCCTCCTTAAT | 52352969 ebolavirus | RP0400 | 400 | >gi|52352969|gb|AY729654.1| Sudan ebolavirus strain Gulu, complete genome James More ... |
| TGAAACAAGATCCTTCACAACCCACTTCT | 52352969 ebolavirus | RP0405 | 405 | >gi|52352969|gb|AY729654.1| Sudan ebolavirus strain Gulu, complete genome James More ... |
| TATCGATTATGTTGATAATGTAAATAATA | 52352969 ebolavirus | RP0407 | 407 | >gi|52352969|gb|AY729654.1| Sudan ebolavirus strain Gulu, complete genome James More ... |
| CCCGAGCCATATACGGGGTCGAGCCCATG | GU979419 Spissistilus festinus virus | RP0532 | 532 | >gi|300432042|gb|GU979419.1| Spissistilus festinus virus 1, complete genome Comp More ... |
| GCCTAGAAAAGTGAGGCAAGGGATGTTTT | GU979419 Spissistilus festinus virus | RP0533 | 533 | >gi|300432042|gb|GU979419.1| Spissistilus festinus virus 1, complete genome Comp More ... |
| Summary for Structure ((((:::[[[:::)))):::::::::]]] - 10 records total | ||||
| Structure: ((((:::[[[[)))):::::::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TAAAAAGAAATTTTAACTCTCCAGATTT | X82130 Odontoglossum ringspot virus | RP0197 | 197 | >gi|558231|emb|X82130.1| Odontoglossum ringspot virus RNA for replicase, movem More ... |
| TTGCACTCCCTGCAAGGGACACAGAGGG | NC_012958 Drosophila A virus | RP0342 | 342 | method: computational James F. Lynn 10-23-2009 >gi|253761971|ref|NC_012958.1| Dr More ... |
| TAGTATTTTATACTAACTCTAGGAATAA | NC_003871 Carrot red leaf luteovirus | RP0350 | 350 | method: computational James F. Lynn 10-24-2009 >gi|20889313|ref|NC_003871.1| Car More ... |
| Summary for Structure ((((:::[[[[)))):::::::::]]]] - 3 records total | ||||
| Structure: ((((:::[[[[)))):::::]]]] | ||||
| Sequence | Organism | ID# | ID | Notes |
| TTTTAAATTTTAAAAGCATCAAAA | AP000545 Homo sapiens | RP0221 | 221 | >gi|5931523|dbj|AP000545 Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye More ... |
| AAGCGTTCTTTGCTTATGAAAAAG | DQ113897.1| Adult diarrheal rotavirus | RP0285 | 285 | >gi|69145385|gb|DQ113897.1| Adult diarrheal rotavirus strain J19 VP1 Computatio More ... |
| TCGGAACTGGCCCGAACAATGCCA | NC_009597 Pyrococcus abyssi virus | RP0298 | 298 | method: computational James F. Lynn 10-23-2009 >gi|149274319|ref|NC_009597.1| P More ... |
| TTTTCAACAACAAAATCCTGGTTG | NC_012126 California sea lion anellovirus | RP0364 | 364 | method: computational James F. Lynn 10-25-09 >gi|224504298|ref|NC_012126.1| Cali More ... |
| Summary for Structure ((((:::[[[[)))):::::]]]] - 4 records total | ||||
| Sequence | Organism | ID# | ID | Notes |
| Page summary 177 - records total | ||||
| Global summary 674 - records total | ||||
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